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Creators/Authors contains: "Schimel, Joshua"

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  1. Abstract Aboveground ecosystem structure moderates and even confers essential ecosystem functions. This includes an ecosystem’s carbon dynamics, which are strongly influenced by its structure: for example, tropical savannas like those in central Kenya store substantial amounts of carbon in soil. Savannas’ belowground allocation of carbon makes them important for global carbon sequestration, but difficult to monitor. However, the labile soil carbon pool is responsive to changes in ecosystem structure and is thus a good indicator of overall soil organic carbon dynamics. Kenya’s savanna structure is controlled by belowground ecosystem engineers (termites), ambient weather conditions, and the aboveground engineering influences of large-bodied, mammalian consumers. As a result, climate change and biodiversity loss are likely to change savannas’ aboveground structure. To predict likely outcomes of these threats on savanna soil carbon, it is critical to explore the relationships between labile soil carbon and ecosystem structure, local climate, and mammalian consumer community composition. In a large-scale, long-term herbivore exclosure experiment in central Kenya, we sampled labile carbon from surface soils at three distinct savanna structural elements: termite mounds, beneath tree canopies, and the grassland matrix. In one sampling year, we measured total extractable organic carbon (TEOC), total extractable nitrogen (TEN), and extractable microbial biomass for each sample. Across three sampling years with varying weather conditions, we measured rate of labile soil carbon mineralization. We quantified areal coverage of each structural element across herbivore community treatments to estimate pool sizes and mineralization dynamics at the plot scale. Concentrations and stocks of soil TEOC, TEN, and microbial biomass were driven by the structural element from which they were sampled (soils collected under tree canopies generally had the highest of each). Large-bodied herbivore community composition interacted variably with concentrations, stocks, and carbon mineralization, resulting in apparently compensatory effects of herbivore treatment and structural element with no net effects of large herbivore community composition on plot-scale labile carbon dynamics. We confirmed engineering of structural heterogeneity by consumers and identified distinct labile carbon dynamics in each structural element. However, carbon and nitrogen were also influenced by consumer community composition, indicating potentially compensatory interacting effects of herbivore treatment and structural element. These results suggest that one pathway by which consumers influence savanna carbon is by altering its structural heterogeneity and thus the heterogeneity of its plot-scale labile carbon. 
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  2. Abstract. African elephants (Loxodonta africana) are the largest extant terrestrial mammals, with bodies containing enormous quantities of nutrients. Yet, we know little about how these nutrients move through the ecosystem after an elephant dies. Here, we investigated the initial effects (1–26 months postmortem) of elephant megacarcasses on savanna soil and plant nutrient pools in the Kruger National Park, South Africa. We hypothesized that (H1) elephant megacarcass decomposition would release nutrients into soil, resulting in higher concentrations of soil nitrogen (N), phosphorus (P), and micronutrients near the center of carcass sites; (H2) carbon (C) inputs into the soil would stimulate microbial activity, resulting in increased soil respiration potential near the center of carcass sites; and (H3) carcass-derived nutrients would be absorbed by plants, resulting in higher foliar nutrient concentrations near the center of carcass sites. To test our hypotheses, we identified 10 elephant carcass sites split evenly between nutrient-poor granitic and nutrient-rich basaltic soils. At each site, we ran transects in the four cardinal directions from the center of the carcass site, collecting soil and grass (Urochloa trichopus, formerly U. mosambicensis) samples at 0, 2.5, 5, 10, and 15 m. We then analyzed samples for C, N, P, and micronutrient concentrations and quantified soil microbial respiration potential. We found that concentrations of soil nitrate, ammonium, δ15N, phosphate, and sodium were elevated closer to the center of carcass sites (H1). Microbial respiration potentials were positively correlated with soil organic C, and both respiration and organic C decreased with distance from the carcass (H2). Finally, we found evidence that plants were readily absorbing carcass-derived nutrients from the soil, with foliar %N, δ15N, iron, potassium, magnesium, and sodium significantly elevated closer to the center of carcass sites (H3). Together, these results indicate that elephant megacarcasses release ecologically consequential pulses of nutrients into the soil which stimulate soil microbial activity and are absorbed by plants into the above-ground nutrient pools. These localized nutrient pulses may drive spatiotemporal heterogeneity in plant diversity, herbivore behavior, and ecosystem processes. 
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    Free, publicly-accessible full text available January 1, 2026
  3. Abstract Atmospheric nitrogen (N) deposition and climate change are transforming the way N moves through dryland watersheds. For example, N deposition is increasing N export to streams, which may be exacerbated by changes in the magnitude, timing, and intensity of precipitation (i.e., the precipitation regime). While deposition can control the amount of N entering a watershed, the precipitation regime influences rates of internal cycling; when and where soil N, plant roots, and microbes are hydrologically coupled via diffusion; how quickly plants and microbes assimilate N; and rates of denitrification, runoff, and leaching. We used the ecohydrological model RHESSys to investigate (a) how N dynamics differ between N‐limited and N‐saturated conditions in a dryland watershed, and (b) how total precipitation and its intra‐annual intermittency (i.e., the time between storms in a year), interannual intermittency (i.e., the duration of dry months across multiple years), and interannual variability (i.e., variance in the amount of precipitation among years) modify N dynamics and export. Streamflow nitrate (NO3) export was more sensitive to increasing rainfall intermittency (both intra‐annual and interannual) and variability in N‐limited than in N‐saturated model scenarios, particularly when total precipitation was lower—the opposite was true for denitrification which is more sensitive in N‐saturated than N‐limited scenarios. N export and denitrification increased or decreased more with increasing interannual intermittency than with other changes in precipitation amount. This suggests that under future climate change, prolonged droughts that are followed by more intense storms may pose a major threat to water quality in dryland watersheds. 
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  4. Abstract Retrogressive thaw slumps (RTS)—thermal erosion of soil and vegetation after ground ice thaw—are increasing. Recovery of plant biomass after RTS is important for maintaining Arctic carbon (C) stocks and is regulated by nutrient availability for new plant growth. Many RTS are characterized by verdant shrub growth mid-succession, atypical of the surrounding nutrient-limited tundra. Here, we investigated the potential for internal and external sources of nitrogen (N) and phosphorus (P) to support mid-successional shrub growth at three Alaskan RTS chronosequences. We assessed patterns of soil and microbial CNP, soil NP cycling rates and stocks, N inputs via biological N2-fixation, and thaw leachate over time after disturbance. We found a clear transfer of P stocks from mineral to organic soils with increasing site age, yet insufficient N from any one source to support observed shrub growth. Instead, multiple mechanisms may have contributed to mid-successional shrub growth, including sustained N-cycling with reduced plant biomass, N leaching from undisturbed tundra, uninvestigated sources of N2-fixation, and most promising given the large resource, deep mineral soil N stocks. These potential mechanisms of N supply are critical for the regulation of the Arctic C cycle in response to an increasingly common climate-driven disturbance. 
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  5. High latitude ecosystems are characterized by cold soils and long winters, with much of their biogeochemistry directly or indirectly controlled by temperature. Climate warming has led to an expansion of shrubby plant communities across tussock tundra, but whether these clear aboveground shifts correspond to changes in the microbial community belowground remains less certain. Using bromodeoxyuridine to label growing cells, we evaluated how total and actively growing bacterial communities varied throughout a year and following 22 years of passive summer warming. We found that changes in total and actively growing bacterial community structures were correlated with edaphic factors and time point sampled, but were unaffected by warming. The aboveground plant community had become more shrub-dominated with warming at this site, and so our results indicate that belowground bacterial communities did not track changes in the aboveground plant community. As such, studies that have used space-for-time methods to predict how increased shrub cover has altered bacterial communities may not be representative of how the microbial community will be affected by in situ changes in the plant community as the Arctic continues to warm. 
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